Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition.
Identifieur interne : 000856 ( Main/Exploration ); précédent : 000855; suivant : 000857Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition.
Auteurs : Hilary L. Barker [États-Unis] ; Jennifer F. Riehl [États-Unis] ; Carolina Bernhardsson [Suède] ; Kennedy F. Rubert-Nason [États-Unis] ; Liza M. Holeski [États-Unis] ; P R K. Ingvarsson [Suède] ; Richard L. Lindroth [États-Unis]Source :
- Molecular ecology [ 1365-294X ] ; 2019.
Descripteurs français
- KwdFr :
- Animaux (MeSH), Biologie moléculaire (MeSH), Biote (MeSH), Gènes de plante (génétique), Génotype (MeSH), Insectes (physiologie), Interactions hôte-parasite (MeSH), Phénotype (MeSH), Polymorphisme de nucléotide simple (génétique), Populus (génétique), Écologie (MeSH), Étude d'association pangénomique (MeSH), Évolution biologique (MeSH).
- MESH :
- génétique : Gènes de plante, Polymorphisme de nucléotide simple, Populus.
- physiologie : Insectes.
- Animaux, Biologie moléculaire, Biote, Génotype, Interactions hôte-parasite, Phénotype, Écologie, Étude d'association pangénomique, Évolution biologique.
English descriptors
- KwdEn :
- Animals (MeSH), Biological Evolution (MeSH), Biota (MeSH), Ecology (MeSH), Genes, Plant (genetics), Genome-Wide Association Study (MeSH), Genotype (MeSH), Host-Parasite Interactions (MeSH), Insecta (physiology), Molecular Biology (MeSH), Phenotype (MeSH), Polymorphism, Single Nucleotide (genetics), Populus (genetics).
- MESH :
- genetics : Genes, Plant, Polymorphism, Single Nucleotide, Populus.
- physiology : Insecta.
- Animals, Biological Evolution, Biota, Ecology, Genome-Wide Association Study, Genotype, Host-Parasite Interactions, Molecular Biology, Phenotype.
Abstract
Community genetics aims to understand the effects of intraspecific genetic variation on community composition and diversity, thereby connecting community ecology with evolutionary biology. Thus far, research has shown that plant genetics can underlie variation in the composition of associated communities (e.g., insects, lichen and endophytes), and those communities can therefore be considered as extended phenotypes. This work, however, has been conducted primarily at the plant genotype level and has not identified the key underlying genes. To address this gap, we used genome-wide association mapping with a population of 445 aspen (Populus tremuloides) genets to identify the genes governing variation in plant traits (defence chemistry, bud phenology, leaf morphology, growth) and insect community composition. We found 49 significant SNP associations in 13 Populus genes that are correlated with chemical defence compounds and insect community traits. Most notably, we identified an early nodulin-like protein that was associated with insect community diversity and the abundance of interacting foundation species (ants and aphids). These findings support the concept that particular plant traits are the mechanistic link between plant genes and the composition of associated insect communities. In putting the "genes" into "genes to ecosystems ecology", this work enhances understanding of the molecular genetic mechanisms that underlie plant-insect associations and the consequences thereof for the structure of ecological communities.
DOI: 10.1111/mec.15158
PubMed: 31233634
Affiliations:
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Ingvarsson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Lindroth, Richard L" sort="Lindroth, Richard L" uniqKey="Lindroth R" first="Richard L" last="Lindroth">Richard L. Lindroth</name><affiliation wicri:level="2"><nlm:affiliation>Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Entomology, University of Wisconsin-Madison, Madison, WI</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author></analytic><series><title level="j">Molecular ecology</title><idno type="eISSN">1365-294X</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Biological Evolution (MeSH)</term><term>Biota (MeSH)</term><term>Ecology (MeSH)</term><term>Genes, Plant (genetics)</term><term>Genome-Wide Association Study (MeSH)</term><term>Genotype (MeSH)</term><term>Host-Parasite Interactions (MeSH)</term><term>Insecta (physiology)</term><term>Molecular Biology (MeSH)</term><term>Phenotype (MeSH)</term><term>Polymorphism, Single Nucleotide (genetics)</term><term>Populus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term><term>Biologie moléculaire (MeSH)</term><term>Biote (MeSH)</term><term>Gènes de plante (génétique)</term><term>Génotype (MeSH)</term><term>Insectes (physiologie)</term><term>Interactions hôte-parasite (MeSH)</term><term>Phénotype (MeSH)</term><term>Polymorphisme de nucléotide simple (génétique)</term><term>Populus (génétique)</term><term>Écologie (MeSH)</term><term>Étude d'association pangénomique (MeSH)</term><term>Évolution biologique (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genes, Plant</term><term>Polymorphism, Single Nucleotide</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Gènes de plante</term><term>Polymorphisme de nucléotide simple</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Insectes</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Insecta</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Biological Evolution</term><term>Biota</term><term>Ecology</term><term>Genome-Wide Association Study</term><term>Genotype</term><term>Host-Parasite Interactions</term><term>Molecular Biology</term><term>Phenotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Biologie moléculaire</term><term>Biote</term><term>Génotype</term><term>Interactions hôte-parasite</term><term>Phénotype</term><term>Écologie</term><term>Étude d'association pangénomique</term><term>Évolution biologique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Community genetics aims to understand the effects of intraspecific genetic variation on community composition and diversity, thereby connecting community ecology with evolutionary biology. Thus far, research has shown that plant genetics can underlie variation in the composition of associated communities (e.g., insects, lichen and endophytes), and those communities can therefore be considered as extended phenotypes. This work, however, has been conducted primarily at the plant genotype level and has not identified the key underlying genes. To address this gap, we used genome-wide association mapping with a population of 445 aspen (Populus tremuloides) genets to identify the genes governing variation in plant traits (defence chemistry, bud phenology, leaf morphology, growth) and insect community composition. We found 49 significant SNP associations in 13 Populus genes that are correlated with chemical defence compounds and insect community traits. Most notably, we identified an early nodulin-like protein that was associated with insect community diversity and the abundance of interacting foundation species (ants and aphids). These findings support the concept that particular plant traits are the mechanistic link between plant genes and the composition of associated insect communities. In putting the "genes" into "genes to ecosystems ecology", this work enhances understanding of the molecular genetic mechanisms that underlie plant-insect associations and the consequences thereof for the structure of ecological communities.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31233634</PMID><DateCompleted><Year>2020</Year><Month>06</Month><Day>15</Day></DateCompleted><DateRevised><Year>2020</Year><Month>06</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-294X</ISSN><JournalIssue CitedMedium="Internet"><Volume>28</Volume><Issue>19</Issue><PubDate><Year>2019</Year><Month>10</Month></PubDate></JournalIssue><Title>Molecular ecology</Title><ISOAbbreviation>Mol Ecol</ISOAbbreviation></Journal><ArticleTitle>Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition.</ArticleTitle><Pagination><MedlinePgn>4404-4421</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/mec.15158</ELocationID><Abstract><AbstractText>Community genetics aims to understand the effects of intraspecific genetic variation on community composition and diversity, thereby connecting community ecology with evolutionary biology. Thus far, research has shown that plant genetics can underlie variation in the composition of associated communities (e.g., insects, lichen and endophytes), and those communities can therefore be considered as extended phenotypes. This work, however, has been conducted primarily at the plant genotype level and has not identified the key underlying genes. To address this gap, we used genome-wide association mapping with a population of 445 aspen (Populus tremuloides) genets to identify the genes governing variation in plant traits (defence chemistry, bud phenology, leaf morphology, growth) and insect community composition. We found 49 significant SNP associations in 13 Populus genes that are correlated with chemical defence compounds and insect community traits. Most notably, we identified an early nodulin-like protein that was associated with insect community diversity and the abundance of interacting foundation species (ants and aphids). These findings support the concept that particular plant traits are the mechanistic link between plant genes and the composition of associated insect communities. In putting the "genes" into "genes to ecosystems ecology", this work enhances understanding of the molecular genetic mechanisms that underlie plant-insect associations and the consequences thereof for the structure of ecological communities.</AbstractText><CopyrightInformation>© 2019 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Barker</LastName><ForeName>Hilary L</ForeName><Initials>HL</Initials><Identifier Source="ORCID">0000-0002-2187-831X</Identifier><AffiliationInfo><Affiliation>Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Riehl</LastName><ForeName>Jennifer F</ForeName><Initials>JF</Initials><AffiliationInfo><Affiliation>Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bernhardsson</LastName><ForeName>Carolina</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rubert-Nason</LastName><ForeName>Kennedy F</ForeName><Initials>KF</Initials><AffiliationInfo><Affiliation>Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Holeski</LastName><ForeName>Liza M</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ingvarsson</LastName><ForeName>Pär K</ForeName><Initials>PK</Initials><Identifier Source="ORCID">0000-0001-9225-7521</Identifier><AffiliationInfo><Affiliation>Department of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lindroth</LastName><ForeName>Richard L</ForeName><Initials>RL</Initials><Identifier Source="ORCID">0000-0003-4587-7255</Identifier><AffiliationInfo><Affiliation>Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>PRJEB30919</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>07</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Ecol</MedlineTA><NlmUniqueID>9214478</NlmUniqueID><ISSNLinking>0962-1083</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058448" MajorTopicYN="Y">Biota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004463" MajorTopicYN="N">Ecology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055106" MajorTopicYN="Y">Genome-Wide Association Study</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006790" MajorTopicYN="Y">Host-Parasite Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007313" MajorTopicYN="N">Insecta</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008967" MajorTopicYN="Y">Molecular Biology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Populus
</Keyword><Keyword MajorTopicYN="Y">community genetics</Keyword><Keyword MajorTopicYN="Y">defence chemistry</Keyword><Keyword MajorTopicYN="Y">genome-wide association mapping</Keyword><Keyword MajorTopicYN="Y">plant-insect interactions</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>02</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>05</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>06</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>6</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>6</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31233634</ArticleId><ArticleId IdType="doi">10.1111/mec.15158</ArticleId></ArticleIdList><ReferenceList><Title>REFERENCES</Title><Reference><Citation>Abreu, I. 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Lindroth</name><name sortKey="Lindroth, Richard L" sort="Lindroth, Richard L" uniqKey="Lindroth R" first="Richard L" last="Lindroth">Richard L. Lindroth</name><name sortKey="Riehl, Jennifer F" sort="Riehl, Jennifer F" uniqKey="Riehl J" first="Jennifer F" last="Riehl">Jennifer F. Riehl</name><name sortKey="Rubert Nason, Kennedy F" sort="Rubert Nason, Kennedy F" uniqKey="Rubert Nason K" first="Kennedy F" last="Rubert-Nason">Kennedy F. Rubert-Nason</name></country><country name="Suède"><noRegion><name sortKey="Bernhardsson, Carolina" sort="Bernhardsson, Carolina" uniqKey="Bernhardsson C" first="Carolina" last="Bernhardsson">Carolina Bernhardsson</name></noRegion><name sortKey="Ingvarsson, P R K" sort="Ingvarsson, P R K" uniqKey="Ingvarsson P" first="P R K" last="Ingvarsson">P R K. Ingvarsson</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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